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Preprint / Version 1

Overcoming Deficiencies in Gene Therapy Delivery with Chimeric and Inducible Vectors

##article.authors##

  • Palash Gupta Male

DOI:

https://doi.org/10.58445/rars.3176

Keywords:

Viral Vectors, Bioengineering, Chimeric, Chimeric Viral Vectors, Inducible, Inducible Viral Vectors, AAV, Adenovirus, Lentivirus, Gene Therapy

Abstract

Viral gene therapy intends to bring genetic materials to the cell using a modified virus. This delivery system is called a viral vector. The viral vector often takes the property of the virus in regards to delivery, so the choice of virus leads to various outputs. Viruses differ from one another depending on their tropism, hitting certain tissues better than others; immunogenicity; and size. This review compiles evidence of recent innovations in the delivery of gene therapy using viral vectors with a specific emphasis on inducible and chimeric viral vectors that address long-standing limitations of traditional viral vectors. Conventional viral vectors, despite being the current standard for gene therapy delivery, pose risks and have significant flaws. Many elicit severe immunogenic responses and often hit unintended cells and tissues. This review discusses two new categories of viral vectors: chimeric vectors, which are a combination of two or more vectors, and inducible viral vectors, which use spacio-temporal awareness to improve efficiency and targeting. Chimeric vectors adopt key features from multiple different vectors to create a hybrid. These hybrid vectors can target new cell types, lower immunogenicity, and make downstream purification easier.Meanwhile, inducible vectors rely on external stimuli to dictate their expression. Inducers include small molecules, RNA, and light. While concerns remain around scalability of these therapies, the next level targeting capabilities make them promising for further use in the gene therapy space.

References

K. Lundstrom, “Viral Vectors in Gene Therapy: Where Do We Stand in 2023?,” Viruses, vol. 15, no. 3, p. 698, Mar. 2023, doi: 10.3390/v15030698.

X. Gu, D. He, C. Li, H. Wang, and G. Yang, “Development of Inducible CD19-CAR T Cells with a Tet-On System for Controlled Activity and Enhanced Clinical Safety,” Int. J. Mol. Sci., vol. 19, no. 11, p. 3455, Nov. 2018, doi: 10.3390/ijms19113455.

H. C. J. Ertl, S. L. Currie, and A. D. Luber, “Restricting use of adenovirus vector-based COVID vaccines could endanger public and global health,” Front. Immunol., vol. 13, p. 985382, Aug. 2022, doi: 10.3389/fimmu.2022.985382.

J. N. Warnock, C. Daigre, and M. Al-Rubeai, “Introduction to Viral Vectors,” in Viral Vectors for Gene Therapy, vol. 737, O.-W. Merten and M. Al-Rubeai, Eds., Totowa, NJ: Humana Press, 2011, pp. 1–25. doi: 10.1007/978-1-61779-095-9_1.

J. T. Bulcha, Y. Wang, H. Ma, P. W. L. Tai, and G. Gao, “Viral vector platforms within the gene therapy landscape,” Feb. 2021, doi: https://doi.org/10.1038/s41392-021-00487-6.

Y. S. B.Pharm, “Types of Viral Vectors.” Accessed: June 25, 2025. [Online]. Available: https://www.news-medical.net/life-sciences/Types-of-Viral-Vectors.aspx

M. F. Naso, B. Tomkowicz, W. L. Perry, and W. R. Strohl, “Adeno-Associated Virus (AAV) as a Vector for Gene Therapy,” Biodrugs, vol. 31, no. 4, pp. 317–334, 2017, doi: 10.1007/s40259-017-0234-5.

X. Li, Y. Le, Z. Zhang, X. Nian, B. Liu, and X. Yang, “Viral Vector-Based Gene Therapy,” Int. J. Mol. Sci., vol. 24, no. 9, p. 7736, Apr. 2023, doi: 10.3390/ijms24097736.

J. L. Shirley, Y. P. De Jong, C. Terhorst, and R. W. Herzog, “Immune Responses to Viral Gene Therapy Vectors,” Mol. Ther., vol. 28, no. 3, pp. 709–722, Mar. 2020, doi: 10.1016/j.ymthe.2020.01.001.

S. Nisole and A. Saïb, “Early steps of retrovirus replicative cycle,” Retrovirology, vol. 1, no. 1, p. 9, May 2004, doi: 10.1186/1742-4690-1-9.

W. Dong and B. Kantor, “Lentiviral Vectors for Delivery of Gene-Editing Systems Based on CRISPR/Cas: Current State and Perspectives,” Viruses, vol. 13, no. 7, p. 1288, July 2021, doi: 10.3390/v13071288.

CDC, “About Adenovirus.” Accessed: June 29, 2025. [Online]. Available: https://www.cdc.gov/adenovirus/about/index.html

“How to Choose the Right Cas Variant for Every CRISPR Experiment.” Accessed: June 30, 2025. [Online]. Available: https://www.synthego.com/guide/how-to-use-crispr/cas-nuclease-variants

D. Duan, “Micro-Dystrophin Gene Therapy Goes Systemic in Duchenne Muscular Dystrophy Patients,” Hum. Gene Ther., vol. 29, no. 7, pp. 733–736, July 2018, doi: 10.1089/hum.2018.012.

“Chimeric Viral Vectors.” Accessed: June 30, 2025. [Online]. Available: https://www.beckman.com/support/faq/research/what-are-chimeric-viral-vectors

S. Stroik, “Viral Vectors 101: Viral Vector Elements.” Accessed: July 15, 2025. [Online]. Available: https://blog.addgene.org/viral-vectors-101-viral-vector-elements

Dick and Yun, “Viral Vector - an overview | ScienceDirect Topics.” Accessed: July 15, 2025. [Online]. Available: https://www.sciencedirect.com/topics/engineering/viral-vector

N. Clément and J. C. Grieger, “Manufacturing of recombinant adeno-associated viral vectors for clinical trials,” Mol. Ther. Methods Clin. Dev., vol. 3, p. 16002, Mar. 2016, doi: 10.1038/mtm.2016.2.

S. S. Issa, A. A. Shaimardanova, V. V. Solovyeva, and A. A. Rizvanov, “Various AAV Serotypes and Their Applications in Gene Therapy: An Overview,” Cells, vol. 12, no. 5, p. 785, Mar. 2023, doi: 10.3390/cells12050785.

B. Hardesty et al., “Global Seroprevalence of Pre-existing Immunity Against AAV5 and Other AAV Serotypes in People with Hemophilia A,” Hum. Gene Ther., vol. 33, pp. 432–441, 2022, doi: 10.1089/hum.2021.287.

E. Lopez-Gordo, K. Chamberlain, J. M. Riyad, E. Kohlbrenner, and T. Weber, “Natural Adeno-Associated Virus Serotypes and Engineered Adeno-Associated Virus Capsid Variants: Tropism Differences and Mechanistic Insights,” Viruses, vol. 16, no. 3, p. 442, Mar. 2024, doi: 10.3390/v16030442.

B. Hauck, L. Chen, and W. Xiao, “Generation and characterization of chimeric recombinant AAV vectors,” Mol. Ther., vol. 7, no. 3, pp. 419–425, Mar. 2003, doi: 10.1016/S1525-0016(03)00012-1.

X. Shen, T. Storm, and M. A. Kay, “Characterization of the relationship of AAV capsid domain swapping to liver transduction efficiency,” Mol. Ther. J. Am. Soc. Gene Ther., vol. 15, no. 11, pp. 1955–1962, Nov. 2007, doi: 10.1038/sj.mt.6300293.

A. Muravyeva and S. Smirnikhina, “Strategies for Modifying Adenoviral Vectors for Gene Therapy,” Int. J. Mol. Sci., vol. 25, no. 22, p. 12461, Nov. 2024, doi: 10.3390/ijms252212461.

H. Fausther-Bovendo and G. P. Kobinger, “Pre-existing immunity against Ad vectors,” Hum. Vaccines Immunother., vol. 10, no. 10, pp. 2875–2884, Nov. 2014, doi: 10.4161/hv.29594.

H. Mizuguchi and T. Hayakawa, “Adenovirus vectors containing chimeric type 5 and type 35 fiber proteins exhibit altered and expanded tropism and increase the size limit of foreign genes,” Gene, vol. 285, no. 1–2, pp. 69–77, Feb. 2002, doi: 10.1016/s0378-1119(02)00410-9.

D. M. Shayakhmetov, T. Papayannopoulou, G. Stamatoyannopoulos, and A. Lieber, “Efficient Gene Transfer into Human CD34+ Cells by a Retargeted Adenovirus Vector,” J. Virol., vol. 74, no. 6, pp. 2567–2583, Mar. 2000, doi: 10.1128/jvi.74.6.2567-2583.2000.

E. Kul et al., “Development of adenoviral vectors that transduce Purkinje cells and other cerebellar cell-types in the cerebellum of a humanized mouse model,” Mol. Ther. Methods Clin. Dev., vol. 32, no. 2, June 2024, doi: 10.1016/j.omtm.2024.101243.

J. Yang and G.-F. Luo, “Peptide-Based Vectors for Gene Delivery,” Chemistry, vol. 5, no. 3, pp. 1696–1718, Sept. 2023, doi: 10.3390/chemistry5030116.

S. Urandur and M. O. Sullivan, “Peptide-Based Vectors: A Biomolecular Engineering Strategy for Gene Delivery,” Annu. Rev. Chem. Biomol. Eng., vol. 14, no. Volume 14, 2023, pp. 243–264, June 2023, doi: 10.1146/annurev-chembioeng-101121-070232.

A. Bennett et al., “Structure comparison of the chimeric AAV2.7m8 vector with parental AAV2.,” J. Struct. Biol., 2019, doi: 10.1016/j.jsb.2019.107433.

N. Kim and Y. Yokobayashi, “Novel RNA Viral Vectors for Chemically Regulated Gene Expression in Embryonic Stem Cells,” ACS Synth. Biol., vol. 10, no. 11, pp. 2959–2967, Nov. 2021, doi: 10.1021/acssynbio.1c00214.

K. Felekkis, E. Touvana, C. Stefanou, and C. Deltas, “microRNAs: a newly described class of encoded molecules that play a role in health and disease,” Hippokratia, vol. 14, no. 4, pp. 236–240, 2010.

A. Geisler and H. Fechner, “MicroRNA-regulated viral vectors for gene therapy,” World J. Exp. Med., vol. 6, no. 2, pp. 37–54, May 2016, doi: 10.5493/wjem.v6.i2.37.

J. Xie, D. R. Burt, and G. Gao, “AAV-mediated miRNA Delivery and Therapeutics,” Semin. Liver Dis., vol. 35, no. 1, pp. 81–88, Feb. 2015, doi: 10.1055/s-0034-1397352.

J. Xie et al., “MicroRNA-regulated, Systemically Delivered rAAV9: A Step Closer to CNS-restricted Transgene Expression,” Mol. Ther., vol. 19, no. 3, pp. 526–535, Mar. 2011, doi: 10.1038/mt.2010.279.

A. T. Das, L. Tenenbaum, and B. Berkhout, “Tet-On Systems For Doxycycline-inducible Gene Expression,” Curr. Gene Ther., vol. 16, no. 3, pp. 156–167, June 2016, doi: 10.2174/1566523216666160524144041.

R. C. I. Wüst, R. H. Houtkooper, and J. Auwerx, “Confounding factors from inducible systems for spatiotemporal gene expression regulation,” J. Cell Biol., vol. 219, no. 7, p. e202003031, May 2020, doi: 10.1083/jcb.202003031.

S. Goverdhana et al., “Regulatable gene expression systems for gene therapy applications: progress and future challenges,” Mol. Ther., vol. 12, no. 2, pp. 189–211, Aug. 2005, doi: 10.1016/j.ymthe.2005.03.022.

Y. Komatsu et al., “RNA Virus-Based Episomal Vector with a Fail-Safe Switch Facilitating Efficient Genetic Modification and Differentiation of iPSCs,” Mol. Ther. - Methods Clin. Dev., vol. 14, pp. 47–55, Sept. 2019, doi: 10.1016/j.omtm.2019.05.010.

S. Cheng, M. M. van Gaalen, M. Bähr, E. Garea-Rodriguez, and S. Kügler, “Optimized pharmacological control over the AAV-Gene-Switch vector for regulable gene therapy,” Mol. Ther. Methods Clin. Dev., vol. 23, pp. 1–10, Dec. 2021, doi: 10.1016/j.omtm.2021.07.007.

H. Duplus-Bottin et al., “A single-chain and fast-responding light-inducible Cre recombinase as a novel optogenetic switch,” eLife, vol. 10, p. e61268, doi: 10.7554/eLife.61268.

D. Arranz-Paraíso, Y. Sola, D. Baeza-Moyano, M. Benítez-Martínez, S. Melero-Tur, and R. A. González-Lezcano, “Mitochondria and light: An overview of the pathways triggered in skin and retina with incident infrared radiation,” J. Photochem. Photobiol. B, vol. 238, p. 112614, Jan. 2023, doi: 10.1016/j.jphotobiol.2022.112614.

M. Hörner et al., “Spatiotemporally confined red light-controlled gene delivery at single-cell resolution using adeno-associated viral vectors,” Sci. Adv., vol. 7, no. 25, p. eabf0797, June 2021, doi: 10.1126/sciadv.abf0797.

Y. Wang et al., “Generation of a caged lentiviral vector through an unnatural amino acid for photo-switchable transduction,” Nucleic Acids Res., vol. 47, no. 19, p. e114, Nov. 2019, doi: 10.1093/nar/gkz659.

“Continuous Viral Vector Manufacturing.” Accessed: July 29, 2025. [Online]. Available: https://ispe.org/pharmaceutical-engineering/may-june-2025/continuous-viral-vector-manufacturing

“Breakdown of costs of manufacturing for viral vector processes: (A)...” Accessed: July 29, 2025. [Online]. Available: https://www.researchgate.net/figure/Breakdown-of-costs-of-manufacturing-for-viral-vector-processes-A-capital-costs-for_fig3_370308570

C. for B. E. and Research, “Human Gene Therapy Products Incorporating Human Genome Editing.” Accessed: July 29, 2025. [Online]. Available: https://www.fda.gov/regulatory-information/search-fda-guidance-documents/human-gene-therapy-products-incorporating-human-genome-editing

J. S. Moffit et al., “Regulatory Consideration for the Nonclinical Safety Assessment of Gene Therapies,” Hum. Gene Ther., vol. 33, no. 21–22, pp. 1126–1141, Nov. 2022, doi: 10.1089/hum.2022.090.

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